Code repositories
- STARCall workflow repository: https://github.com/FowlerLab/starcall-workflow/
- Feature analysis repository: https://github.com/FowlerLab/visseq/
- Single cell feature analysis repository: https://github.com/FowlerLab/fisseqtools/
Data availablility
- Summary data: https://zenodo.org/records/15787685
- Hosting of the full raw and stitched image data is in progress, it will be made available here when hosted
- Example testing dataset: LMNA_T3_testing_image_set.tar.gz (5.7GB)
- This example dataset is a very small subset of one of the wells for LMNA. Once downloaded and extracted, it can be run directly with the above starcall workflow pipeline. The raw image data takes up ~9GB once extracted, and the processing will require another ~10GB.
VIS-seq is now preprinted! https://www.biorxiv.org/content/10.1101/2025.07.03.663081v1